MASARYK UNIVERSITY

Postdoc - Bioinformatician, Deep Learning For NGS Analyses

Location
Brno (CZ)
Posted
04 Dec 2017
End of advertisement period
28 Jan 2018
Contract Type
Permanent
Hours
Full Time

POSTDOC - BIOINFORMATICIAN, DEEP LEARNING FOR NGS ANALYSES  

Department  Centre for Molecular Medicine – Central European Institute of Technology 

Deadline  28 Jan 2018

Start date  Negotiable 

The Director of Central European Institute of Technology (CEITEC MU) opens a position 

Postdoc - Bioinformatician, Deep Learning for NGS analyses 

Description 

CEITEC is a scientific centre in the fields of life sciences, advanced materials and technologies whose aim is to establish itself as a recognized centre for basic as well as applied research. CEITEC offers a state-of-the-art infrastructure and great conditions to employ excellent researchers. 

Our institute values diversity and promotes an inclusive working environment with the aim to support the best scientists. 

A Postdoctoral position is available in the laboratory of Panagiotis Alexiou in the area of Machine Learning. The postdoctoral researcher will be responsible for the development of Machine Learning applications (among others Deep Neural Networks) in the direction of identifying patterns within Next Generation Sequencing Data from RNA and DNA binding proteins. The position is exclusively in silico based, there is no wet-lab component. 

Requirements: 

  • Be within 7 years after receiving PhD. Ph.D or equivalent, preferably in the field of Bioinformatics or Computer Science 
  • Expertise in the analysis of Next Generation Sequencing (specifically CHIP-Seq and CLIP-Seq data) and Machine Learning (preferably Convolutional Neural Networks and state of the art Deep Learning technologies) 
  • Expertise in perl or python, bash scripting, and R (caret, mxnetR) 
  • Strong interpersonal and communication skills 
  • Published in impactful journals in the field, corresponding to given stage of career demonstrating creativity and scientific quality (with at least 2 papers, one the them as first author, during the last 3 years) 
  • Worked at least 2 whole years out of the last 3 outside of the Czech Republic 
  • Good English language – spoken and written

  
Desirable but not required: 

  • Deep understanding of Molecular Biology theory and experimental procedures 
  • Expertise on RNA/DNA Binding Proteins and Small RNAs will be a positive asset 
  • Familiarity with Machine Learning software (tensorflow, keras) preferable 
  • Motivated person with collaborative mind set 
  • Willingness to engage in the life of academic community 
     

We offer: 

  • Interesting position in a dynamically expanding research institute 
  • An attractive salary and benefits package 
  • Background of a recognized and successful institution with supportive and international working environment 
  • Environment promoting interdisciplinarity and intersectorality of research 
  • In house core facilities 
  • Support of administrative departments (including grant office service) 
  • Support with the relocation process (welcome office service) 
  • 6 weeks of paid holiday 
     

Anticipated start date: Negotiable 

Applications including CV, contacts for referees and a brief motivation letter should be sent by e-application available below.  

Electronic application deadline is: January 28th, 2018  

Information about Brno, Czech Republic  

  • The capital of South Moravian Region and the second largest city in the Czech Republic with a population of almost 400,000 people 
  • Modern, dynamic and fast growing centre of industry, trade, science, research and innovation with business incubators and centres of excellence in science 
  • A city of universities with more than 86,000 students 
  • More than 10,000 researchers; 2,200 IF publications/year; 600+ PhD graduates/year, 
  • 500 mil. EUR of R&D investment per year, more than 350 companies with in-house R&D, 
  • City of Gregor Mendel, the founder of genetics; the prestigious Mendel Lectures series takes place in Brno since 2003 (lectures of the world´s top scientists, including Nobel Prize winners), 
  • Quality of life index in 2016 


For further information about: 

CEITEC, please visit www.ceitec.eu 
Postdoc@MUNI is available at http://postdoc.muni.cz 
Masaryk University, please visit www.muni.cz 
Brno, please visit http://www2.brno.cz/index.php?lan=en&nav01=20608&nav02=20617